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FDA’s AI tool ‘Elsa’ is here, and the industry has questions

The Food and Drug Administration aims to roll out its new AI tool, called Elsa, “ahead of schedule and under budget,” according to Commissioner Marty Makary, who offered up the most information to date about the agency’s new tool and AI goals this week.

After completing a pilot program of AI-assisted scientific reviews last month, the FDA announced it was taking an “aggressive” approach to scale up the use of Elsa agency-wide by June 30. That timeline moved up this week. In a Monday video announcement, Makary described how Elsa will modernize the agency to help employees, including scientific reviewers and investigators, reduce non-productive busywork.

“The agency is using Elsa to expedite clinical protocol reviews and reduce the overall time to complete scientific reviews,” Makary said. “One scientific reviewer told me what took him two to three days now takes six minutes.”

Other tasks performed by Elsa included “summarizing adverse events to support safety profile assessments, conducting expedited label comparisons and generating code to facilitate the development of databases for nonclinical applications.”

The launch has been criticized by some FDA employees as “rushed,” possibly to account for significant personnel cuts at the agency enacted by the Department of Government Efficiency over the last several months, STAT News reported.

Makary also attempted to address security concerns in the announcement, noting the language model-powered AI tool wasn’t trained on data submitted by the industry and data is held within a secure “GovCloud environment.” The agency provided few other details regarding how Elsa was trained and how much it’s been tested.

Questions remain

The FDA will plan to focus Elsa’s scope on administrative tasks such as summarizing documents and data extraction. This is the appropriate approach, according to Panna Sharma, CEO and president of Lantern Pharma, an AI-focused biopharmaceutical company.

“These are exactly the applications where current generative AI … completely excels and where we see similar gains in drug development and scientific review internally at Lantern Pharma,” he said. “The key will be maintaining this performance as the system scales across different review types, medicines, diseases, and with differing or incomplete background information or literature.”

The agency noted Elsa’s introduction is “the initial step in the FDA’s overall AI journey,” with the potential to add more tasks like data processing down the line. In May, the FDA also said it would refine its features over time and gather feedback.

“The big question I have focuses on the continuous learning and improvement side of things. How regularly will the FDA audit some of those AI outputs and help identify certain error patterns or maybe hallucinations or problematic prompts that might require retraining? ” said Chase Feiger, CEO and co-founder of Ostro, an AI company that works with many of the largest drugmakers.

One area of concern is transparency. Will pharmas know if AI was used in their reviews, for example? If an AI-generated analysis leads to a rejection or delay, sponsors may face the challenge of “limited visibility into how much AI influenced the decision, raising concerns about opaque or unvalidated reasoning,” wrote lawyers from Hogan Lovells in a May blog post.

Other legal experts see the potential for AI tools to have too much influence in review decisions.

“If sponsors are aware that AI was used in scientific review of their applications, the agency’s use of AI could become a topic in future appeals, requests for supervisory review, or formal dispute resolution requests following unfavorable decisions on premarket applications,” King & Spalding lawyers wrote in a recent client alert.

A handful of regulatory and data experts peppered the FDA’s LinkedIn post of the announcement with questions about the more nuanced details of the tool, even as many applauded the agency’s modernization efforts.

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